Skip to contents

All functions

add_habitat()
Add habitat zones to a Habitat object
add_link()
Add links to a trophic table
add_nohabitat()
Add non-habitat zones to a Habitat object
compute_dispersal()
Compute dispersal or spread map (Generic Engine)
compute_kernel()
Create a 2D Gaussian motion kernel as a SpatRaster
dispersal()
Disperse a species or variable over the landscape
flux()
Apply trophic flux from a resource layer
get_departements_for_roi()
Identify codes of departments intersecting a region of interest
get_ocsge_data_fgb()
Collect data from OCS GE repository using FlatGeobuf on S3
habitat()
Create a Habitat object
habitat_raster()
Create a raster from a habitat object
intake()
Constructor for Intake Parameters
is_cyclic()
Test if a directed graph is cyclic
load_raster_extdata()
load raster file from internal data
lower_neighbors()
Get resource layers for a given trophic layer
normalize_weights()
Normalize weights of a trophic table
ocsge_metaleurop
SF object defining very simplified OCS-GE soil cover metaleurop
plot(<trophic_tbl>)
Plot a trophic table
raster_stack()
Create a RasterStack from a list of rasters and names
ref_ocsge
Nomenclature of OCS-GE soil cover
roi_metaleurop
SF object defining ROI metaleurop
spacemodel()
Create a spacemodel object
`[`(<trophic_tbl>)
Subset method for trophic_tbl
transfer()
Transfer (food, contaminant) across trophic levels
trophic()
Create a trophic table