Package index • spacemodR

All functions

DBFunc_BirdFuncDat: Bird Functional Traits Dataset (EltonTraits 1.0)
DBFunc_MamFuncDat: Mammal Functional Traits Dataset (EltonTraits 1.0)
FmrBT: Field Metabolic Rates Database (FmrBT)
SSD_ecoSSL_all: Eco-SSL Toxicity Data for Multiple Taxonomic Groups
add_flux(): Add a Flux Rule
add_habitat(): Add habitat zones to a Habitat object
add_link(): Add links to a trophic table
add_nohabitat(): Add non-habitat zones to a Habitat object
apply_flux(): Apply trophic flux from a resource layer
bappet_cd: Data concentration Cd Soil - Veetation extracted from BAPPET
calibrate_direct(): Calibrate direct transfer model
calibrate_simple(): Calibrate simple transfer model
calibrate_trophic(): Calibrate trophic transfer model
compute_dispersal(): Compute dispersal or spread map (Generic Engine)
compute_kernel(): Create a 2D Gaussian motion kernel as a SpatRaster
cv_soil(): Cross-validate a soil interpolation method
dispersal(): Disperse a species or variable over the landscape
earthworm_cd: Data concentration Cd Soil - Earthworm
fit_soil_variogram(): Fit a variogram model to an empirical soil variogram
flux(): Constructor for Flux Parameters
get_departements_for_roi(): Identify codes of departments intersecting a region of interest
get_eunis_data(): Efficiently retrieve EUNIS land cover data from the EEA Ecosystem Type Map
get_ocsge_data_fgb(): Efficiently retrieve OCS GE data from a remote FlatGeobuf
habitat(): Create a Habitat object
habitat_raster(): Rasterize a Habitat Object
is_cyclic(): Test if a directed graph is cyclic
join_ocsge_species(): Join OCSGE Spatial Data with Species Traits
kernel_smooth_soil(): Gaussian kernel smoothing of soil concentrations
krige_soil(): Krige soil concentrations into a raster
load_raster_extdata(): load raster file from internal data
lower_neighbors(): Get resource layers for a given trophic layer
normalize_weights(): Normalize weights of a trophic table
ocsge_metaleurop: SF object defining very simplified OCS-GE soil cover metaleurop
ocsge_species_dict: Valued weights and resistance between OCS-GE layers and species
plot(<habitat>): Plot a Habitat object
plot(<soil_vgm>): Plot an empirical variogram and its fitted model(s)
plot(<trophic_tbl>): Plot a trophic table
plot_species_habitat(): Plot Habitat Suitability Maps from OCSGE Data
raster_stack(): Create a RasterStack from a list of rasters and names
ref_eunis: Nomenclature and render colors of EUNIS land cover classes
ref_ocsge: Nomenclature of OCS-GE soil cover
roi_metaleurop: SF object defining ROI metaleurop
sf_micromammals: DataBase of collected MicroMammals species
soil_grid(): Build a regular raster grid around sampling points
soil_metaleurop: Soil metal concentrations sampled around the former Metaleurop smelter
soil_variogram(): Empirical semi-variogram of soil concentrations
soil_vgm(): Build a variogram model by hand
source_covariates(): Distance and wind covariates around a contamination source
spacemodR-package spacemodR: The 'spacemodR' package.
spacemodel(): Create a spacemodel object
`[`(<trophic_tbl>): Subset method for trophic_tbl
summary(<soil_cv>): Summarise a cross-validation
transfer(): Transfer (food, contaminant) across trophic levels
trophic(): Create a trophic table