Package index • spacemodR

All functions

add_habitat(): Add habitat zones to a Habitat object
add_link(): Add links to a trophic table
add_nohabitat(): Add non-habitat zones to a Habitat object
bappet_cd: Data concentration Cd Soil - Veetation extracted from BAPPET
calibrate_direct(): Calibrate direct transfer model
calibrate_simple(): Calibrate simple transfer model
calibrate_trophic(): Calibrate trophic transfer model
compute_dispersal(): Compute dispersal or spread map (Generic Engine)
compute_kernel(): Create a 2D Gaussian motion kernel as a SpatRaster
dispersal(): Disperse a species or variable over the landscape
earthworm_cd: Data concentration Cd Soil - Earthworm
flux(): Apply trophic flux from a resource layer
get_departements_for_roi(): Identify codes of departments intersecting a region of interest
get_ocsge_data_fgb(): Efficiently retrieve OCS GE data from a remote FlatGeobuf
habitat(): Create a Habitat object
habitat_raster(): Rasterize a Habitat Object
intake(): Constructor for Intake Parameters
is_cyclic(): Test if a directed graph is cyclic
join_ocsge_species(): Join OCSGE Spatial Data with Species Traits
load_raster_extdata(): load raster file from internal data
lower_neighbors(): Get resource layers for a given trophic layer
normalize_weights(): Normalize weights of a trophic table
ocsge_metaleurop: SF object defining very simplified OCS-GE soil cover metaleurop
ocsge_species_dict: Valued weight between OCSGE layer and species
plot(<habitat>): Plot a Habitat object
plot(<trophic_tbl>): Plot a trophic table
plot_species_habitat(): Plot Habitat Suitability Maps from OCSGE Data
raster_stack(): Create a RasterStack from a list of rasters and names
ref_ocsge: Nomenclature of OCS-GE soil cover
roi_metaleurop: SF object defining ROI metaleurop
sf_micromammals: DataBase of collected MicroMammals species
spacemodR-package spacemodR: The 'spacemodR' package.
spacemodel(): Create a spacemodel object
`[`(<trophic_tbl>): Subset method for trophic_tbl
transfer(): Transfer (food, contaminant) across trophic levels
trophic(): Create a trophic table